PDB

A structure in the PDB format.

Displaying 1 - 49 of 49

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Structure Description

D151g, drug resistant variant of influenza N2 neuraminidase protein bound to Oseltamivir (G39) with glycine acid at position 151 instead of aspartic acid.

PDB ID
4GZT
Structure Type
PDB
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Structure Description

Human superoxide dismutase with a mutation that replaces His 46 with arginine.

Collection
PDB ID
1OEZ
Structure Type
PDB
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Structure Description

BRCA1 carboxyl terminal end with BRCT repeats, bound to CtIP phosphopeptide, a partner in detecting and repairing DNA. Contains the normal amino acid D1840.

Collection
PDB ID
1Y98
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats.   Modeling was used to align 3K16 to 1Y98 and add the CtIP phosphopeptide. Contains the D1840t missense mutation.

Collection
PDB ID
3K16
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats, bound to CtIP phosphopeptide, a partner in detecting and repairing DNA. Contains the normal amino acid G1656.

Collection
PDB ID
1Y98
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end, BRCT repeats. Modeling was used to align 3PXA to 1Y98 and add the CtIP phosphopeptide. Contains the G1656d missense mutation.

Collection
PDB ID
3PXA
Structure Type
PDB
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Structure Description

BRCA1 carboxyl terminal end, BRCT repeats.  Contains the CtIP binding domain and M1775k mutation.

Collection
PDB ID
1N5O
Structure Type
PDB
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Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats, bound to CtIP phosphopeptide, a partner in detecting and repairing DNA. Contains the normal amino acid R1699.

Collection
PDB ID
1Y98
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats. Modeling was used to align 3PXC to 1Y98 and add the CtIP phosphopeptide. Contains the R1699q missense mutation.

Collection
PDB ID
3PXC
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats, bound to CtIP phosphopeptide, a partner in detecting and repairing DNA. Contains the normal amino acid T1700.

Collection
PDB ID
1Y98
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats.   Modeling was used to align 3PXB to 1Y98 and add the CtIP phosphopeptide.  Contains the T1700a missense mutation.

Collection
PDB ID
3PXB
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats, bound to CtIP phosphopeptide, a partner in detecting and repairing DNA. Contains the normal amino acid V1809.

Collection
PDB ID
1Y98
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats.   Modeling was used to align 1T2U to 1Y98 and add the CtIP phosphopeptide. Contains the V1809f missense mutation.

Collection
PDB ID
1T2U
Structure Type
PDB
Teaser Image
Image
Structure Description

BRCA1 carboxyl terminal end with BRCT repeats, bound to CtIP phosphopeptide, a partner in detecting and repairing DNA.

Collection
PDB ID
1Y98
Structure Type
PDB
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Structure Description

A scorpion neurotoxin. Hydrogens are present because this structure was solved by NMR

Collection
PDB ID
1CHL
Structure Type
PDB
Structure file
1CHL.pdb.gz

On pinene and inhibiting enzymes. People of a certain age may remember a series of really funny commercials featuring Euell Gibbons and his famous question about whether you've ever eaten a pine tree. " Some parts are edible" said Euell. Perhaps some parts are, but other pine tree products aren't ...

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Structure Description

Karyopherin-beta2 bound to a portion of the normal FUS protein with proline 525.

PDB ID
5YVI
Structure Type
PDB
Structure file
5yvi.pdb.gz
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Image
Structure Description

Karyopherin-Beta2 bound to a portion of the FUS protein, with a hypothetical model of a Pro525leu mutation. Note - this exact structure wouldn't exist because of steric hindrance.

PDB ID
5YVI
Structure Type
PDB
Structure file
5yvi_P525L_mut.pdb.gz
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Structure Description

Heat tolerant alpha amylase, aligned to a normal version of the same protein.

Collection
PDB ID
1E3Z
Structure Type
PDB
Structure file
1E3Z_aligned.pdb.gz
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Structure Description

Human superoxide dismutase with copper and zinc.

Collection
PDB ID
1HL5
Structure Type
PDB
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Structure Description

N294, drug sensistive influenza N1 neuraminidase bound to Oseltamivir (G39).

PDB ID
2HU0_chainB
Structure Type
PDB
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Structure Description

N294s, drug resistant influenza N1 neuraminidase with serine at position 294 instead of asparagine bound to Oseltamivir (G39).

PDB ID
2CL2
Structure Type
PDB
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Image
Structure Description

I223r, drug resistant influenza N1 neuraminidase from the 2009 pandemic strain bound to Oseltamivir (G39) with an arginine at position 223 instead of isoleucine.

PDB ID
4B7J
Structure Type
PDB
Teaser Image
Image
Structure Description

I223r, drug resistant influenza N1 neuraminidase from the 2009 pandemic strain bound to Zanamivir (ZMR) with arginine at position 223 instead of isoleucine.

PDB ID
4B7N
Structure Type
PDB
Teaser Image
Image
Structure Description

A drug sensitive influenza N1 neuraminidase from the 2009 pandemic strain bound to Zanamivir (ZMR).

PDB ID
4B7Q
Structure Type
PDB
Teaser Image
Image
Structure Description

A drug sensitive Influenza N1 neuraminidase from the 2009 pandemic strain bound to Oseltamivir (G39).

PDB ID
4B7R
Structure Type
PDB
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Structure Description

A drug sensitive influenza B neuraminidase bound to Oseltamivir (G39).  

PDB ID
4CPM
Structure Type
PDB
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Structure Description

Influenza B neuraminidase proteins bound to Zanamivir (ZMR).  The drug-resistant variant has leucine at position 220 in the protein sequence instead of an isoleucine.

PDB ID
4CPN, 4CPZ
Structure Type
PDB
Structure file
4CPN.pdb.gz
Teaser Image
Image
Structure Description

I220l, drug resistant variant of Influenza B neuraminidase bound to Oseltamivir (G39) with leucine at position 220 instead of isoleucine.

PDB ID
4CPY
Structure Type
PDB
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Structure Description

A drug sensitive influenza N9 neuraminidase bound to Oseltamivir (G39).

PDB ID
4MWQ
Structure Type
PDB
Teaser Image
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Structure Description

A drug sensitive influenza N9 neuraminidase bound to Zanamivir (ZMR).

PDB ID
4MWR
Structure Type
PDB
Teaser Image
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Structure Description

A drug sensitive influenza N9 neuraminidase bound to Lanamivir (LNV)

PDB ID
4MWU
Structure Type
PDB
Teaser Image
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Structure Description

A drug sensitive influenza N9 neuraminidase bound to Peramivir (BCZ). 

PDB ID
4MWV
Structure Type
PDB
Teaser Image
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Structure Description

R294k, drug resistant influenza N9 neuraminidase bound to Oseltamivir (G39) with lysine at position 294 instead of arginine.

PDB ID
4MWW
Structure Type
PDB
Teaser Image
Image
Structure Description

R294k, drug resistant influenza N9 neuraminidase bound to Zanamivir (ZMR), with arginine at position 294 instead of lysine.

PDB ID
4MWX
Structure Type
PDB
Teaser Image
Image
Structure Description

R294k, drug resistant influenza N9 neuraminidase bound to Lanamivir (LNV) with lysine at position 294 instead of arginine.

PDB ID
4MWY
Structure Type
PDB
Teaser Image
Image
Structure Description

R294k, drug resistant influenza N9 neuraminidase bound to Peramivir (BCZ) with lysine at position 294 instead of arginine.

PDB ID
4MX0
Structure Type
PDB
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Structure Description

A drug sensitive influenza N2 neuraminidase bound to Oseltamivir (G39).

PDB ID
4GZP
Structure Type
PDB
Teaser Image
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Structure Description

Maltohexaose is an intermediate in the production of maltose from starch by alpha amylase.

Collection
PDB ID
maltohexaose
Structure Type
PDB
Structure file
maltohexaose.pdb.gz
Teaser Image
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Structure Description

A mutant form of  5-Aminolaevulinic Acid Dehydratase.  The mutation causes F12 to replaced by a leucine (L).  For the best comparison, look at the leucine at PDB position 12 in chain B.

Collection
PDB ID
1PV8
Structure Type
PDB
Teaser Image
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Structure Description

The normal form of  5-Aminolaevulinic Acid Dehydratase.  This protein is involved in synthesizing heme. 

Collection
PDB ID
1E51
Structure Type
PDB
Teaser Image
Image
Structure Description

Normal alpha amylase, aligned to a heat tolerant version of the same protein.

Collection
PDB ID
1BLI
Structure Type
PDB
Structure file
align_1BL1.pdb.gz

To have an effect, a molecule must bind to a receptor and trigger a signal. Studying a receptor's structure can give us insights about the way this triggering process works. Capsaicin is a fascinating molecule that puts the "pep" into peppers. Curiously, the amount of capsaicin in a pepper is ...

Science Blog

Today (4/25) is national DNA day. Digital World Biology™ is celebrating by sharing some of our favorite structures of DNA. We created these photos with Molecule World™ a new iPad app for viewing molecular structures. As we are taught in school, the double stranded DNA molecule is a right-handed helix ...

Science Blog
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April 25th (4/25) is national DNA day. Digital World Biology™ celebrates by sharing some of our favorite DNA structures. We created these photos with Molecule World™ Molecule World is a tools for exploring molecular and chemical structures on an iPhone or iPad.

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Structure Description

Unknown 5

Collection
Structure Type
PDB
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Structure Description

Unknown 5

Collection
Structure Type
PDB
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Structure Description

An antibiotic that forms a pore in a membrane, causing ions to leak out.

Structure Type
PDB
Structure file
valinomycin.pdb.gz

Sucrose Molecules of sucrose tore apart in their bellies letting glucose course free in their veins. Luckily for us, a system evolved long ago to capture that glucose and minimize it's potential for damage. Removing sugar from the blood and sequestering it in liver, fat, and muscle cells, minimizes the ...

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