Where possible, links go to SARS-CoV-2 resources within each database. The table is discussed in Bio Datatabases 2021: SARS-CoV-2 Antibody Structures
|
Database, Description, Link
|
Focus | NAR Database |
|---|---|---|
| Antibody Databases | ||
| CoV-AbDab 3,434 entries (Oct 2021) - Antibodies / Nanobodies CoV-1, CoV-2, MERS, other corona viruses, PDB files + homology models https://opig.stats.ox.ac.uk/webapps/covabdab/ |
Immunology | No |
| COVID-19 Biologics Tracker Tracking over 200 biotechnology-derived protein-based COVID-19 interventions https://www.antibodysociety.org/covid-19-biologics-tracker/ |
Immunology | No |
| IEDB (Immune Epitope Database) General epitope database, can search for structures - curated from literature resources https://www.iedb.org/home_v3.php |
Immunology | Yes |
| Validation for COVID-19 Related Antibodies Assigns unique and persistent identifiers to each antibody so that they can be referenced within publications. https://antibodyregistry.org/covid19 |
Immunology | No |
| Sequence Databases | ||
| GISAID Repository of SARS / Flu and other sequences, a primary source for data https://gisaid.org/ |
Genomics | No |
| Nextstrain Open data platform that Includes GISAID data - https://nextstrain.org/blog/2021-07-08-ncov-open-announcement/ for more https://nextstrain.org/sars-cov-2/ |
Genomics | No |
| CDC variants Portal to COVID-19 resources https://www.cdc.gov/coronavirus/2019-ncov/variants/index.html |
Genomics | No |
| New NAR SARS-CoV-2 Databases | ||
| CoV3D Experimental coronavirus protein structures https://cov3d.ibbr.umd.edu/ |
Proteins | Yes |
| DockCoV2 In silico drug docking against SARS-CoV2 targets https://covirus.cc/drugs/ |
Drugs | Yes |
| GESS Global Evaluation of SARS-CoV2 Sequences https://wan-bioinfo.shinyapps.io/GESS/ |
Genomics | Yes |
| LitCovid Curated COVID-19 literature https://www.ncbi.nlm.nih.gov/research/coronavirus/ |
Literature | Yes |
| PAGER-COV Pathways and gene lists related to COVID-19 http://discovery.informatics.uab.edu/PAGER-COV/ |
Genomics | Yes |
| ViruSurf Portal to SARS-CoV2 sequences and variants http://gmql.eu/virusurf/ |
Genomics | Yes |
| Previous NAR Viral Databases Updated with SARS-CoV-2 Data | ||
|
AVPdb
A database of experimentally validated AntiViral Peptides - 67 viruses, 2683 AVPs
|
Biologics |
Yes
|
|
IMG/VR
Comparative analysis of viral genomes at the DOE Joint Genome Institute
|
Genomics |
Yes
|
|
NCBI Viral genomes
Viral genome resource at NCBI
|
Genomics |
Yes
|
|
ViPR
Virus Pathogen and analysis Resource, sequences, immune epitopes, 3D …, last release 2020 - March, 3629 Coronaviridae genomes
|
Genomics / Immunology |
Yes
|
|
ViralZone
Molecular and epidemiological information on viral genera and families, released the virosaurus in Apr 2020
|
Genomics |
Yes
|
|
ViRBase
Virus-host interaction-associated ncRNA
|
Genomics / RNA |
Yes |
|
VirHostNet
A knowledgebase of virus-host molecular interaction networks, last release 2020 - Mar
|
Genomics / Proteins |
Yes
|
|
VirOligo
Virus-specific oligonucleotides for PCR and hybridization
|
Genomics |
Yes
|
|
VIRsiRNAdb
Experimentally validated Viral siRNA/shRNA
|
Genomics / RNA | Yes |
|
Virus Mentha
Virus-host protein interactions, last update 2020 - Apr
|
Proteins |
No
|
|
Virus Taxonomy
The International Committee on Taxonomy of Viruses (ICTV) is concerned with the designation and naming of virus taxa
|
Genomics |
Yes
|
|
Viral Genomes
Nucleotide and protein sequences of viral reference genomes, NCBI
|
Genomics / Proteins |
Yes
|