SARS-CoV-2 Variant and Antibody Databases

Where possible, links go to SARS-CoV-2 resources within each database. The table is discussed in Bio Datatabases 2021: SARS-CoV-2 Antibody Structures

Database, Description, Link
Focus NAR Database
Antibody Databases
CoV-AbDab
3,434 entries (Oct 2021) - Antibodies / Nanobodies CoV-1, CoV-2, MERS, other corona viruses, PDB files + homology models
http://opig.stats.ox.ac.uk/webapps/covabdab/
Immunology No
COVID-19 Biologics Tracker
Tracking over 200 biotechnology-derived protein-based COVID-19 interventions
https://www.antibodysociety.org/covid-19-biologics-tracker/
Immunology No
IEDB (Immune Epitope Database)
General epitope database, can search for structures - curated from literature resources
https://www.iedb.org/home_v3.php
Immunology Yes
Validation for COVID-19 Related Antibodies
Assigns unique and persistent identifiers to each antibody so that they can be referenced within publications.
https://antibodyregistry.org/covid19
Immunology No
Sequence Databases
GISAID
Repository of SARS / Flu and other sequences, a primary source for data
https://www.gisaid.org/
Genomics No
Nextstrain
Open data platform that Includes GISAID data - https://nextstrain.org/blog/2021-07-08-ncov-open-announcement/ for more
https://nextstrain.org/sars-cov-2/
Genomics No
CDC variants
Portal to COVID-19 resources
https://www.cdc.gov/coronavirus/2019-ncov/variants/index.html
Genomics No
New NAR SARS-CoV-2 Databases
CoV3D
Experimental coronavirus protein structures
https://cov3d.ibbr.umd.edu/
Proteins Yes
DockCoV2
In silico drug docking against SARS-CoV2 targets
https://covirus.cc/drugs/
Drugs Yes
GESS
Global Evaluation of SARS-CoV2 Sequences
https://wan-bioinfo.shinyapps.io/GESS/
Genomics Yes
LitCovid
Curated COVID-19 literature
https://www.ncbi.nlm.nih.gov/research/coronavirus/
Literature Yes
PAGER-COV
Pathways and gene lists related to COVID-19
http://discovery.informatics.uab.edu/PAGER-COV/ 
Genomics Yes
ViruSurf
Portal to SARS-CoV2 sequences and variants
http://gmql.eu/virusurf/ 
Genomics Yes
Previous NAR Viral Databases Updated with SARS-CoV-2 Data 
AVPdb 
A database of experimentally validated AntiViral Peptides - 67 viruses, 2683 AVPs
Biologics
Yes
IMG/VR
Comparative analysis of viral genomes at the DOE Joint Genome Institute 
Genomics
Yes
NCBI Viral genomes 
Viral genome resource at NCBI 
Genomics
Yes
ViPR
Virus Pathogen and analysis Resource, sequences, immune epitopes, 3D …, last release 2020 - March, 3629 Coronaviridae genomes
Genomics / Immunology
Yes
ViralZone
Molecular and epidemiological information on viral genera and families, released the virosaurus in Apr 2020
Genomics 
Yes
ViRBase
Virus-host interaction-associated ncRNA 
Genomics / RNA

Yes

VirHostNet
A knowledgebase of virus-host molecular interaction networks, last release 2020 - Mar
Genomics / Proteins
Yes
VirOligo
Virus-specific oligonucleotides for PCR and hybridization
Genomics
Yes
VIRsiRNAdb
Experimentally validated Viral siRNA/shRNA 
Genomics / RNA Yes
Virus Mentha 
Virus-host protein interactions, last update 2020 - Apr
Proteins
No
Virus Taxonomy
The International Committee on Taxonomy of Viruses (ICTV) is concerned with the designation and naming of virus taxa 
Genomics
Yes
Viral Genomes
Nucleotide and protein sequences of viral reference genomes, NCBI
Genomics / Proteins
Yes

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