Nucleic Acids Research (NAR) Virus related databases.
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Database
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Status
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Last Publication
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COVID-19
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AVPdb
Qureshi, Abid; Thakur, Nishant; Tandon, Himani; Kumar, Manoj
A database of experimentally validated AntiViral Peptides - 67 viruses, 2683 AVPs
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Up
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2014
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No
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DPVweb
Adams M.J. and Antoniw J.F.
Viruses of plants, fungi and protozoa, PLEASE NOTE THAT THIS SITE WILL NOT BE UPDATED WITH SEQUENCE AND TAXONOMIC INFORMATION AFTER AUGUST 2013
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Up
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2006
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No
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Dr.VIS
Yang, Xiaobo; Li, Ming -; Liu, Qi ,; Zhang, Yabing; Qiang, Junyan; Wan, Xueshuai; Wang, Anqiang; Zhang, Haohai; Zhu, Chengpei; Lu, X in; Mao, Yilei; Sang, Xinting; Zhao, Haitao; Zhao, Yi; zhang, xiaoyan
Chromosomal integration sites of viruses in the human tumor
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Dead
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euHCVdb
European Hepatitis C Virus database, last update 2011
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Up
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2006
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no
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HBVdb
Christophe Combet
A knowledge database for the Hepatitis B Virus, last update 2020 - Feb
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Up
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2013
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No
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HCV Database
Carla Kuiken
Variation in hepatitis C virus sequences, no longer funded, last update 2014
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Up
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2005
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No
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HFV database
Carla Kuiken
Hemorrhagic fever virus sequence database
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Up
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2012
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No
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IMG/VR
Kyrpides, Nikos; Paez-Espino, David; Chen, I-Min; Palaniappan, Krishna; Ratner, Anna; Chu, Ken; Szeto, Ernest; Pillay, Manoj; Huang, Jinghua; Markowitz, Victor; Nielsen, Torben; Huntemann, Marcel; Reddy, T.B.K.; Pavlopoulos, Georgios; Sullivan, Matthew; Campbell, Barbara; McMahon, Katherine; Hallam, Steven; Denef, Vincent; Cavicchioli, Ricardo; Caffrey, Sean; Streit, Wolfgang; Webster, John; Handley, Kim; Salekdeh, Ghasem Hosseini; Tsesmetzis, Nicolas; Satubal, João Carlos; Pope, Phil; Liu, Wen-Tso; Rivers, Adam; Ivanova, Natalia
Comparative analysis of viral genomes at the DOE Joint Genome Institute
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Up
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2017
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No
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ISED
Yang, I.S.1,2, Lee, J.-L.2, Lee, J.S.1, Mitchell, W.P.3,4, Oh, H.-B.2, Kang, C.2, and Kim, K.H.1
Influenza virus Sequence and Epitope Database
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Dead
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IVDB - Influenza Virus Database
Chang S.1,2, Zhang J.1, Liao X.1, Zhu X.1,3, Wang D.1, Zhu J.1, Feng T.1, Yang H.1, Yu J.1and Wang J.1
Annotated sequences and geographic distribution of the influenza virus
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Dead
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MRPrimerV
Kim, Min-Soo; Kim, Hyerin; Kang, Nana; An, KyuHyeon; Kim, Doyun; Koo, JaeHyung
PCR primer pairs for detecting RNA virus-mediated infectious diseases
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Dead
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NCBI Viral genomes
Viral genome resource at NCBI
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Up
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2020
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Yes
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Papillomavirus Episteme
Alison McBride
A database of Papillomaviridae family of viruses, last update 2020 - Jan
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Up
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No
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PhEVER
Leonor Palmeira, Simon Penel, Vincent Lotteau, Chantal Rabourdin-Combe, and Christian Gautier
Phylogenetic Exploration of Viruses and their Evolutionary Relationships
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Dead
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pVOGs
Ana Laura Grazziotin1, Eugene V. Koonin2 and David M. Kristensen1,2
Prokaryotic virus orthologous groups of proteins, last update 2016
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Up
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2017
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No
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RepTar
Naama Elefant, Amnon Berger, Harel Shein, Matan Hofree, Hanah Margalit, and Yael Altuvia
Predicted targets of host and viral miRNAs
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Dead
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VIDA
Virus genome open reading frames
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Dead
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VIOLIN
He, Yongqun; Racz, Rebecca; Sayers, Samantha; Lin, Yu; Todd, Thomas; Hur, Junguk; Li, Xinna; Patel, Mukti; Zhao, Boyang; Chung, Monica; Ostrow, Joseph; Sylora, Andrew; Dungarani, Priya; Ulysse, Guerlain; Kochhar, Kanika; Vidri, Boris; Strait, Kelsey; Jourdian, George; Xiang, Zuoshuang
Vaccine Investigation and Online Information Network, 215 Organisms and viruses, 4090 vaccines (2209 licensed), 4044 references, related pathogen (1649) and host (2482) genes
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Up
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2019
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No
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VIPERdb
Shepherd, C.M., Borelli, I.A., Lander, G., Natarajan, P., Siddavanahalli, V.1, Bajaj, C.1, Johnson, J.E., Brooks III, C.L., Reddy, V.S.
Icosahedral virus capsid structures
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Up
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No
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ViPR
Pickett, Brett; Sadat, Eva; Zhang, Yun,; Noronha, Jyothi; Squires, Richard; Hunt, Victoria; Liu, Mengya; Kumar, Sanjeev; Zaremba, Sam; Gu, Zhiping; Zhou, Liwei; Larsen, Christopher; Dietrich, Jon; Klem, Ed; Scheuermann, Richard
Virus Pathogen and analysis Resource, sequences, immune epitopes, 3D …, last release 2020 - March, 3629 Coronaviridae genomes
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Up
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Yes
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Vir-Mir db
Prediction of viral microRNA candidate hairpins, last update 2007
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Up
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2007
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No
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Viral Bioinformatics Resource
Upton C.1 and Lefkowitz E.J.2
Viral genomes, orthologous genes and gene families
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Dead
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ViralORFeome (discontinued)
J. Pellet, L. Tafforeau, M. Lucas-Hourani, V. Navratil, L. Meyniel, G. Achaz, A. Guironnet-Paquet, A. Aublin-Gex, G. Caignard, P. Cassonnet, A. Chaboud, T. Chantier, A. Deloire, C. Demeret, M. Le Breton, G. Neveu, L. Jacotot, P. Vaglio, S. Delmotte, C. Gautier, C. Combet, G. Deleage, M. Favre, F. Tangy, Y. Jacob, P. Andre, V. Lotteau, C. Rabourdin-Combe, and P. O. Vidalain
A reference collection of viral ORFs and their clones
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Dead
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ViralZone
Chantal Hulo 1, Edouard de Castro 1, Patrick Masson 1, Lydie Bougueleret 1,Amos Bairoch 2,3, Ioannis Xenarios 1,4and Philippe Le Mercier 1
Molecular and epidemiological information on viral genera and families, relased the virosaurus in Apr 2020
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Up
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2011
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Yes
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ViRBase
Yanhui Li; Changliang Wang; Zhengqiang Miao; Xiaoman Bi; Deng Wu; Nana Jin; Liqiang Wang; Hao Wu; Kun Qian; Chunhua Li; Ting Zhang; Chunrui Zhang; Ying Yi; Hongyan Lai; Yongfei Hu; Lixin Cheng; Kwong-Sak Leung; Xiaobo Li; Fengmin Zhang; Kongning Li; Xia Li; Dong Wang
Virus-host interaction-associated ncRNA
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Up
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2015
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No
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VirHostNet
Guirimand, Thibaut; Delmotte, Stéphane; Navratil, Vincent
A knowledgebase of virus-host molecular interaction networks, last release 2020 - Mar
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Up
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2020
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Yes
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VirOligo
Onodera K., Song Y. and Melcher U.
Virus-specific oligonucleotides for PCR and hybridization, last update 2003
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Up
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2002
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No
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VIRsiRNAdb
Manoj Kumar
Experimentally validated Viral siRNA/shRNA
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Up
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2012
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No
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Virus Mentha
Calderone, Alberto; Licata, Luana; Cesareni, Gianni
Virus-host protein interactions, last update 2020 - Apr
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Up
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2014
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No
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Virus Taxonomy
Lefkowitz, Elliot; Dempsey, Donald; Hendrickson, Robert; Orton, Richard; Smith, Donald
The International Committee on Taxonomy of Viruses (ICTV) is concerned with the designation and naming of virus taxa
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Up
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Yes
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Viral Genomes
Eneida L. Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer and J. Rodney Brister
Nucleotide and protein sequences of viral reference genomes, NCBI
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Up
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Yes
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ViTa
microRNAs targets of the influenza virus
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Dead
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