NAR Databases About Viruses

Nucleic Acids Research (NAR) Virus related databases.

Database 
Status
Last Publication
COVID-19
AVPdb 
Qureshi, Abid; Thakur, Nishant; Tandon, Himani; Kumar, Manoj 
A database of experimentally validated AntiViral Peptides - 67 viruses, 2683 AVPs
Up
2014
No
DPVweb 
Adams M.J. and Antoniw J.F. 
Viruses of plants, fungi and protozoa, PLEASE NOTE THAT THIS SITE WILL NOT BE UPDATED WITH SEQUENCE AND TAXONOMIC INFORMATION AFTER AUGUST 2013
Up
2006
No
Dr.VIS
Yang, Xiaobo; Li, Ming -; Liu, Qi ,; Zhang, Yabing; Qiang, Junyan; Wan, Xueshuai; Wang, Anqiang; Zhang, Haohai; Zhu, Chengpei; Lu, X in; Mao, Yilei; Sang, Xinting; Zhao, Haitao; Zhao, Yi; zhang, xiaoyan 
Chromosomal integration sites of viruses in the human tumor 
Dead
 
 
euHCVdb 
European Hepatitis C Virus database, last update 2011
Up
2006
no
HBVdb
Christophe Combet 
A knowledge database for the Hepatitis B Virus, last update 2020 - Feb
Up
2013
No
HCV Database
Carla Kuiken 
Variation in hepatitis C virus sequences, no longer funded, last update 2014
Up
2005
No
HFV database
Carla Kuiken 
Hemorrhagic fever virus sequence database 
Up
2012
No
IMG/VR
Kyrpides, Nikos; Paez-Espino, David; Chen, I-Min; Palaniappan, Krishna; Ratner, Anna; Chu, Ken; Szeto, Ernest; Pillay, Manoj; Huang, Jinghua; Markowitz, Victor; Nielsen, Torben; Huntemann, Marcel; Reddy, T.B.K.; Pavlopoulos, Georgios; Sullivan, Matthew; Campbell, Barbara; McMahon, Katherine; Hallam, Steven; Denef, Vincent; Cavicchioli, Ricardo; Caffrey, Sean; Streit, Wolfgang; Webster, John; Handley, Kim; Salekdeh, Ghasem Hosseini; Tsesmetzis, Nicolas; Satubal, João Carlos; Pope, Phil; Liu, Wen-Tso; Rivers, Adam; Ivanova, Natalia 
Comparative analysis of viral genomes at the DOE Joint Genome Institute 
Up
2017
No
ISED
Yang, I.S.1,2, Lee, J.-L.2, Lee, J.S.1, Mitchell, W.P.3,4, Oh, H.-B.2, Kang, C.2, and Kim, K.H.1 
Influenza virus Sequence and Epitope Database 
Dead
 
 
IVDB - Influenza Virus Database
Chang S.1,2, Zhang J.1, Liao X.1, Zhu X.1,3, Wang D.1, Zhu J.1, Feng T.1, Yang H.1, Yu J.1and Wang J.1 
Annotated sequences and geographic distribution of the influenza virus 
Dead
 
 
MRPrimerV
Kim, Min-Soo; Kim, Hyerin; Kang, Nana; An, KyuHyeon; Kim, Doyun; Koo, JaeHyung 
PCR primer pairs for detecting RNA virus-mediated infectious diseases 
Dead
 
 
NCBI Viral genomes 
Viral genome resource at NCBI 
Up
2020
Yes
Papillomavirus Episteme
Alison McBride 
A database of Papillomaviridae family of viruses, last update 2020 - Jan
Up
 
No
PhEVER
Leonor Palmeira, Simon Penel, Vincent Lotteau, Chantal Rabourdin-Combe, and Christian Gautier 
Phylogenetic Exploration of Viruses and their Evolutionary Relationships
Dead
 
 
pVOGs 
Ana Laura Grazziotin1, Eugene V. Koonin2 and David M. Kristensen1,2 
Prokaryotic virus orthologous groups of proteins, last update 2016
Up
2017
No
RepTar
Naama Elefant, Amnon Berger, Harel Shein, Matan Hofree, Hanah Margalit, and Yael Altuvia 
Predicted targets of host and viral miRNAs 
Dead
 
 
VIDA 
Virus genome open reading frames 
Dead
 
 
VIOLIN
He, Yongqun; Racz, Rebecca; Sayers, Samantha; Lin, Yu; Todd, Thomas; Hur, Junguk; Li, Xinna; Patel, Mukti; Zhao, Boyang; Chung, Monica; Ostrow, Joseph; Sylora, Andrew; Dungarani, Priya; Ulysse, Guerlain; Kochhar, Kanika; Vidri, Boris; Strait, Kelsey; Jourdian, George; Xiang, Zuoshuang 
Vaccine Investigation and Online Information Network, 215 Organisms and viruses, 4090 vaccines (2209 licensed), 4044 references, related pathogen (1649) and host (2482) genes
Up
2019
No
VIPERdb
Shepherd, C.M., Borelli, I.A., Lander, G., Natarajan, P., Siddavanahalli, V.1, Bajaj, C.1, Johnson, J.E., Brooks III, C.L., Reddy, V.S. 
Icosahedral virus capsid structures 
Up
 
No
ViPR
Pickett, Brett; Sadat, Eva; Zhang, Yun,; Noronha, Jyothi; Squires, Richard; Hunt, Victoria; Liu, Mengya; Kumar, Sanjeev; Zaremba, Sam; Gu, Zhiping; Zhou, Liwei; Larsen, Christopher; Dietrich, Jon; Klem, Ed; Scheuermann, Richard 
Virus Pathogen and analysis Resource, sequences, immune epitopes, 3D …, last release 2020 - March, 3629 Coronaviridae genomes
Up
 
Yes
Vir-Mir db 
Prediction of viral microRNA candidate hairpins, last update 2007
Up
2007
No
Viral Bioinformatics Resource
Upton C.1 and Lefkowitz E.J.2 
Viral genomes, orthologous genes and gene families
Dead
 
 
ViralORFeome (discontinued)
J. Pellet, L. Tafforeau, M. Lucas-Hourani, V. Navratil, L. Meyniel, G. Achaz, A. Guironnet-Paquet, A. Aublin-Gex, G. Caignard, P. Cassonnet, A. Chaboud, T. Chantier, A. Deloire, C. Demeret, M. Le Breton, G. Neveu, L. Jacotot, P. Vaglio, S. Delmotte, C. Gautier, C. Combet, G. Deleage, M. Favre, F. Tangy, Y. Jacob, P. Andre, V. Lotteau, C. Rabourdin-Combe, and P. O. Vidalain 
A reference collection of viral ORFs and their clones 
Dead
 
 
ViralZone
Chantal Hulo 1, Edouard de Castro 1, Patrick Masson 1, Lydie Bougueleret 1,Amos Bairoch 2,3, Ioannis Xenarios 1,4and Philippe Le Mercier 1 
Molecular and epidemiological information on viral genera and families, relased the virosaurus in Apr 2020
Up
2011
Yes
ViRBase
Yanhui Li; Changliang Wang; Zhengqiang Miao; Xiaoman Bi; Deng Wu; Nana Jin; Liqiang Wang; Hao Wu; Kun Qian; Chunhua Li; Ting Zhang; Chunrui Zhang; Ying Yi; Hongyan Lai; Yongfei Hu; Lixin Cheng; Kwong-Sak Leung; Xiaobo Li; Fengmin Zhang; Kongning Li; Xia Li; Dong Wang 
Virus-host interaction-associated ncRNA 
Up
2015
No
VirHostNet
Guirimand, Thibaut; Delmotte, Stéphane; Navratil, Vincent 
A knowledgebase of virus-host molecular interaction networks, last release 2020 - Mar
Up
2020
Yes
VirOligo
Onodera K., Song Y. and Melcher U. 
Virus-specific oligonucleotides for PCR and hybridization, last update 2003
Up
2002
No
VIRsiRNAdb
Manoj Kumar 
Experimentally validated Viral siRNA/shRNA 
Up
2012
No
Virus Mentha 
Calderone, Alberto; Licata, Luana; Cesareni, Gianni 
Virus-host protein interactions, last update 2020 - Apr
Up
2014
No
Virus Taxonomy
Lefkowitz, Elliot; Dempsey, Donald; Hendrickson, Robert; Orton, Richard; Smith, Donald 
The International Committee on Taxonomy of Viruses (ICTV) is concerned with the designation and naming of virus taxa 
Up
 
Yes
Viral Genomes
Eneida L. Hatcher, Sergey A. Zhdanov, Yiming Bao, Olga Blinkova, Eric P. Nawrocki, Yuri Ostapchuck, Alejandro A. Schäffer and J. Rodney Brister 
Nucleotide and protein sequences of viral reference genomes, NCBI
Up
 
Yes
ViTa 
microRNAs targets of the influenza virus 
Dead
 
 

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