Biochemicals Collection

A collection of biochemicals:  starch, sugars, lipids, fatty acids, amino acids, DNA, tRNA, and protein.


Structures in the collection

Type Description Download structure
An MW Collection

Examples of sugars, fatty acids, nucleotides, and larger macromolecules like protein, DNA, and tRNA.  

Collections can be downloaded in one step and viewed in the iPad version of Molecule World.  Individual structures can be viewed in either version. Download individual structures using the links below.

Binary Data biochemicals2.mwc
PubChem

Glucose, a sugar made by photosynthesis.

Binary Data glucose_CID_79025.sdf.gz
PubChem

Sucrose is a sugar.  It's a disaccharide because it contains two subunits.

File Sucrose_CID_5988.sdf
PubChem

Amylose–a polymer of D-glucose and a component of starch

File Amylose_CID_53477771.sdf
PubChem

Butyric acid is a short chain fatty acid.

File Butyric_acid_CID_264.sdf
PubChem

Oleic acid is a fatty acid.

File Oleic_acid_CID_445639.sdf
PubChem

ATP or Adenosine Triphosphate is used for storing energy.

File ATP_CID_5957.sdf
PubChem

dATP or deoxy Adenosine Triphosphate is a nucleotide.  The deoxy form of the ribose is the form that's found in DNA.

File dATP_CID_15993.sdf
PubChem

TTP or Thymidine Triphosphate is a nucleotide. The thymine base is used in DNA in place of uracil.

File TTP_CID_64968.sdf
PubChem

UTP or Uracil Triphosphate is a nucleotide. Uracil is found in RNA instead of Thymine.

File UTP_CID_6133.sdf
PubChem

L-methionine, an amino acid

File L-methionine_CID_6137.sdf
PubChem

L-glutamic acid, an amino acid

File L-Glutamic_acid_CID_33032.sdf
MMDB

This protein is a snake toxin with phospholipase activity.  

This structure shows hydrogens because it was obtained by NMR.

Binary Data mmdb_3R0L.cn3
MMDB

This structure is a tRNA that specifies phenylalanine.

Binary Data mmdb_1EHZ.cn3
MMDB

A short chain of double-stranded DNA showing hydrogens. Hydrogens are present because this structure was solved by NMR.

Binary Data mmdb_1NAJ.cn3